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PanglaoDB is a database for the scientific community interested in exploration of single cell RNA sequencing experiments from mouse and human. We collect and integrate data from multiple studies and present them through a unified framework.

Usage examples

Run a gene search for SOX2, PECAM1 or ACE2
Browse the full list of samples
Explore the list of cell type markers for Schwann cells
Browse cell types of the mouse retina
Look at the expression of CRX in photoreceptor cells
Find cell clusters where both PECAM1 and VCAM1 are expressed using a boolean search with the 'and' operator
Find quiescent neural stem cells using AND+NOT

SurfVIP破解版

Oscar Franzén, Li-Ming Gan, Johan L M Björkegren, PanglaoDB: a web server for exploration of mouse and human single-cell RNA sequencing data, Database, Volume 2023, 2023, baz046, doi:10.1093/database/baz046

What is single cell RNA sequencing?

Adapted from the Wikipedia article on the topic: Single cell RNA sequencing examines the transcriptomes from individual cells with optimized next generation sequencing technologies, providing a higher resolution of gene expression and a better understanding of the function of an individual cell in the context of its microenvironment.

Database statistics

	Mus musculus	Homo sapiens
Samples	1063	305
Tissues	184	74
Cells	4,459,768	1,126,580
Clusters	8,651	1,748

Dataset of the day

Take a closer look at the cellular composition of Spinal cord, using a dataset which consists of 6372 cells. Clustering of this dataset resulted in 15 cell clusters, containing among others, 极光加速器安卓.

News

极光加速器破解无限版 Ongoing work to move to new hosting.
Green官方版下载 A corrupted MySQL table caused dysfunction in the search function, the problem has now been fixed.
28-11-2023 We are looking for sponsors to host PanglaoDB. We have modest requirements (VPS with Ubuntu, etc). Please get in touch with us if you can provide help (contact@m6tkww.wcbzw.com).
01-07-2023 Updated the 2d view for data sets (now colors by cell type and not by cluster and colors are consistent across data sets). For example, see this data set.
16-05-2023 Added more markers for Tanycytes.
07-05-2023 Added markers for green加速器极光版破解.
01-05-2023 Markers for an additional cell types added: meet the sebocyte.
30-04-2023 Added sensitivity and specificity to the marker list (shown separately for mouse and human).
Show older news

12-04-2023 We are happy to announce alona - a cloud-based single cell analysis service! Try it out.
02-04-2023 Metadata can be downloaded from our github repo.
26-03-2023 The marker download link ("get tsv file") is now a stable link. It can be linked directly in scripts.
19-03-2023 Our manuscript entitled "PanglaoDB: A Web Server for Exploration of Mouse and Human Single Cell RNA Sequencing Data" has been accepted in the journal 安卓Green极光版.
18-03-2023 Markers can be voted for. In an experiment to try to extract crowd-enabled wisdom, we have introduced a voting function for markers. Markers can be upvoted or downvoted using small arrows on the marker page. Each visitor has one vote per marker-cell type. An anonymous hash is computed to store voting status. Arrows become visible when selecting a specific cell type from the list. Voting does not require registration, and it is done anonymously.
19-11-2018 Differential expression analysis now takes input threshold arguments (q-value and log fold change).
16-11-2018 Differential expression analysis is now available. Enter the interactive view for a sample, then click the "Differential expression" link.